WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46H11.11e.1 Sequence Name  C46H11.11e.1
Length (nt)  5097   Chromosome Location  I: 5058620-5066744
Chromosome . Primary Identifier  I Chromosome Location . Start  5058620
Chromosome Location . End  5066744 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46H11.11e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016735 fhod-1 C46H11.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46H11.11e C46H11.11e 5097   I: 5058620-5058675

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46H11.11e.1 5058620 5066744 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11504   56   I: 5058620-5058675 Caenorhabditis elegans
Exon11513   120   I: 5058800-5058919 Caenorhabditis elegans
Exon11521   1222   I: 5058965-5060186 Caenorhabditis elegans
Exon11529   290   I: 5060238-5060527 Caenorhabditis elegans
Exon11537   337   I: 5060774-5061110 Caenorhabditis elegans
Exon11545   129   I: 5061157-5061285 Caenorhabditis elegans
Exon11553   138   I: 5061357-5061494 Caenorhabditis elegans
Exon11561   88   I: 5061610-5061697 Caenorhabditis elegans
Exon11569   147   I: 5061852-5061998 Caenorhabditis elegans
Exon11575   474   I: 5062125-5062598 Caenorhabditis elegans
Exon11581   173   I: 5063151-5063323 Caenorhabditis elegans
Exon11589   231   I: 5063373-5063603 Caenorhabditis elegans
Exon11595   51   I: 5064074-5064124 Caenorhabditis elegans
Exon11601   201   I: 5064194-5064394 Caenorhabditis elegans
Exon11609   68   I: 5064608-5064675 Caenorhabditis elegans
Exon11617   59   I: 5065230-5065288 Caenorhabditis elegans
Exon11621   1313   I: 5065432-5066744 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46H11.11e.1 5058620 5066744 -1

1 Sequence

Length
5097

1 Sequence Ontology Term

Identifier Name Description
transcript