WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46H11.11g.1 Sequence Name  C46H11.11g.1
Length (nt)  4623   Chromosome Location  I: 5058620-5066744
Chromosome . Primary Identifier  I Chromosome Location . Start  5058620
Chromosome Location . End  5066744 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46H11.11g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016735 fhod-1 C46H11.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46H11.11g C46H11.11g 4623   I: 5058620-5058675

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46H11.11g.1 5058620 5066744 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11505   56   I: 5058620-5058675 Caenorhabditis elegans
Exon11515   120   I: 5058800-5058919 Caenorhabditis elegans
Exon11523   1222   I: 5058965-5060186 Caenorhabditis elegans
Exon11531   290   I: 5060238-5060527 Caenorhabditis elegans
Exon11539   337   I: 5060774-5061110 Caenorhabditis elegans
Exon11547   129   I: 5061157-5061285 Caenorhabditis elegans
Exon11555   138   I: 5061357-5061494 Caenorhabditis elegans
Exon11563   88   I: 5061610-5061697 Caenorhabditis elegans
Exon11571   147   I: 5061852-5061998 Caenorhabditis elegans
Exon11583   173   I: 5063151-5063323 Caenorhabditis elegans
Exon11591   231   I: 5063373-5063603 Caenorhabditis elegans
Exon11596   51   I: 5064074-5064124 Caenorhabditis elegans
Exon11603   201   I: 5064194-5064394 Caenorhabditis elegans
Exon11611   68   I: 5064608-5064675 Caenorhabditis elegans
Exon11619   59   I: 5065230-5065288 Caenorhabditis elegans
Exon11622   1313   I: 5065432-5066744 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46H11.11g.1 5058620 5066744 -1

1 Sequence

Length
4623

1 Sequence Ontology Term

Identifier Name Description
transcript