WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46H11.11f.1 Sequence Name  C46H11.11f.1
Length (nt)  5050   Chromosome Location  I: 5058620-5066748
Chromosome . Primary Identifier  I Chromosome Location . Start  5058620
Chromosome Location . End  5066748 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46H11.11f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016735 fhod-1 C46H11.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46H11.11f C46H11.11f 5046   I: 5058620-5058675

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46H11.11f.1 5058620 5066748 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11507   56   I: 5058620-5058675 Caenorhabditis elegans
Exon11514   120   I: 5058800-5058919 Caenorhabditis elegans
Exon11522   1222   I: 5058965-5060186 Caenorhabditis elegans
Exon11530   290   I: 5060238-5060527 Caenorhabditis elegans
Exon11538   337   I: 5060774-5061110 Caenorhabditis elegans
Exon11546   129   I: 5061157-5061285 Caenorhabditis elegans
Exon11554   138   I: 5061357-5061494 Caenorhabditis elegans
Exon11562   88   I: 5061610-5061697 Caenorhabditis elegans
Exon11570   147   I: 5061852-5061998 Caenorhabditis elegans
Exon11576   474   I: 5062125-5062598 Caenorhabditis elegans
Exon11582   173   I: 5063151-5063323 Caenorhabditis elegans
Exon11590   231   I: 5063373-5063603 Caenorhabditis elegans
Exon11602   201   I: 5064194-5064394 Caenorhabditis elegans
Exon11610   68   I: 5064608-5064675 Caenorhabditis elegans
Exon11618   59   I: 5065230-5065288 Caenorhabditis elegans
Exon11624   1317   I: 5065432-5066748 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46H11.11f.1 5058620 5066748 -1

1 Sequence

Length
5050

1 Sequence Ontology Term

Identifier Name Description
transcript