WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46H11.11c.1 Sequence Name  C46H11.11c.1
Length (nt)  4092   Chromosome Location  I: 5058620-5068828
Chromosome . Primary Identifier  I Chromosome Location . Start  5058620
Chromosome Location . End  5068828 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46H11.11c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016735 fhod-1 C46H11.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46H11.11c C46H11.11c 4092   I: 5058620-5058675

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46H11.11c.1 5058620 5068828 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11508   56   I: 5058620-5058675 Caenorhabditis elegans
Exon11511   120   I: 5058800-5058919 Caenorhabditis elegans
Exon11519   1222   I: 5058965-5060186 Caenorhabditis elegans
Exon11527   290   I: 5060238-5060527 Caenorhabditis elegans
Exon11535   337   I: 5060774-5061110 Caenorhabditis elegans
Exon11543   129   I: 5061157-5061285 Caenorhabditis elegans
Exon11551   138   I: 5061357-5061494 Caenorhabditis elegans
Exon11559   88   I: 5061610-5061697 Caenorhabditis elegans
Exon11567   147   I: 5061852-5061998 Caenorhabditis elegans
Exon11574   474   I: 5062125-5062598 Caenorhabditis elegans
Exon11579   173   I: 5063151-5063323 Caenorhabditis elegans
Exon11587   231   I: 5063373-5063603 Caenorhabditis elegans
Exon11593   51   I: 5064074-5064124 Caenorhabditis elegans
Exon11599   201   I: 5064194-5064394 Caenorhabditis elegans
Exon11607   68   I: 5064608-5064675 Caenorhabditis elegans
Exon11615   59   I: 5065230-5065288 Caenorhabditis elegans
Exon11627   175   I: 5068201-5068375 Caenorhabditis elegans
Exon11629   133   I: 5068696-5068828 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46H11.11c.1 5058620 5068828 -1

1 Sequence

Length
4092

1 Sequence Ontology Term

Identifier Name Description
transcript