WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y110A7A.16.1 Sequence Name  Y110A7A.16.1
Length (nt)  3718   Chromosome Location  I: 5114122-5118852
Chromosome . Primary Identifier  I Chromosome Location . Start  5114122
Chromosome Location . End  5118852 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y110A7A.16.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022463 elpc-1 Y110A7A.16 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y110A7A.16 Y110A7A.16 3636   I: 5114199-5114303

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y110A7A.16.1 5114122 5118852 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11738   182   I: 5114122-5114303 Caenorhabditis elegans
Exon11739   170   I: 5114559-5114728 Caenorhabditis elegans
Exon11740   1086   I: 5114778-5115863 Caenorhabditis elegans
Exon11741   646   I: 5116013-5116658 Caenorhabditis elegans
Exon11742   344   I: 5116745-5117088 Caenorhabditis elegans
Exon11743   348   I: 5117262-5117609 Caenorhabditis elegans
Exon11744   289   I: 5117656-5117944 Caenorhabditis elegans
Exon11745   235   I: 5117995-5118229 Caenorhabditis elegans
Exon11746   212   I: 5118281-5118492 Caenorhabditis elegans
Exon11747   60   I: 5118551-5118610 Caenorhabditis elegans
Exon11748   86   I: 5118660-5118745 Caenorhabditis elegans
Exon11749   60   I: 5118793-5118852 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y110A7A.16.1 5114122 5118852 -1

1 Sequence

Length
3718

1 Sequence Ontology Term

Identifier Name Description
transcript