WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y110A7A.1a.1 Sequence Name  Y110A7A.1a.1
Length (nt)  5285   Chromosome Location  I: 5165152-5171309
Chromosome . Primary Identifier  I Chromosome Location . Start  5165152
Chromosome Location . End  5171309 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y110A7A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001833 hcp-6 Y110A7A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y110A7A.1a Y110A7A.1a 5175   I: 5165157-5165340

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y110A7A.1a.1 5165152 5171309 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11896   189   I: 5165152-5165340 Caenorhabditis elegans
Exon11897   245   I: 5165390-5165634 Caenorhabditis elegans
Exon11899   459   I: 5165685-5166143 Caenorhabditis elegans
Exon11901   174   I: 5166201-5166374 Caenorhabditis elegans
Exon11903   1034   I: 5166423-5167456 Caenorhabditis elegans
Exon11905   94   I: 5167502-5167595 Caenorhabditis elegans
Exon11907   478   I: 5167647-5168124 Caenorhabditis elegans
Exon11909   1073   I: 5168167-5169239 Caenorhabditis elegans
Exon11911   952   I: 5169291-5170242 Caenorhabditis elegans
Exon11913   87   I: 5170573-5170659 Caenorhabditis elegans
Exon11915   339   I: 5170761-5171099 Caenorhabditis elegans
Exon11917   161   I: 5171149-5171309 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y110A7A.1a.1 5165152 5171309 1

1 Sequence

Length
5285

1 Sequence Ontology Term

Identifier Name Description
transcript