WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56A3.4.1 Sequence Name  F56A3.4.1
Length (nt)  3878   Chromosome Location  I: 5171285-5176654
Chromosome . Primary Identifier  I Chromosome Location . Start  5171285
Chromosome Location . End  5176654 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56A3.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004955 spd-5 F56A3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56A3.4 F56A3.4 3597   I: 5171494-5171589

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56A3.4.1 5171285 5176654 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11920   305   I: 5171285-5171589 Caenorhabditis elegans
Exon11921   332   I: 5171641-5171972 Caenorhabditis elegans
Exon11923   251   I: 5172023-5172273 Caenorhabditis elegans
Exon11925   886   I: 5172323-5173208 Caenorhabditis elegans
Exon11927   214   I: 5173252-5173465 Caenorhabditis elegans
Exon11929   398   I: 5173514-5173911 Caenorhabditis elegans
Exon11931   82   I: 5173957-5174038 Caenorhabditis elegans
Exon11933   1098   I: 5174086-5175183 Caenorhabditis elegans
Exon11935   188   I: 5175231-5175418 Caenorhabditis elegans
Exon11937   67   I: 5175470-5175536 Caenorhabditis elegans
Exon11939   57   I: 5176598-5176654 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56A3.4.1 5171285 5176654 -1

1 Sequence

Length
3878

1 Sequence Ontology Term

Identifier Name Description
transcript