WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F56A3.4 Sequence Name  F56A3.4
Length (nt)  3597   Chromosome Location  I: 5171494-5171589
Chromosome . Primary Identifier  I Chromosome Location . Start  5171494
Chromosome Location . End  5171589
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56A3.4

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE28834 SPD-5 135.1 1198 Caenorhabditis elegans
 

Other

27 RNAi

WormBase ID
WBRNAi00086071
WBRNAi00081311
WBRNAi00073132
WBRNAi00073134
WBRNAi00065669
WBRNAi00065681
WBRNAi00065683
WBRNAi00063852
WBRNAi00000067
WBRNAi00032916
WBRNAi00073133
WBRNAi00007829
WBRNAi00025693
WBRNAi00025694
WBRNAi00048586
WBRNAi00038542
WBRNAi00069157
WBRNAi00063853
WBRNAi00082287
WBRNAi00082289
WBRNAi00063494
WBRNAi00022757
WBRNAi00022758
WBRNAi00022759
WBRNAi00069342
WBRNAi00069343
WBRNAi00077866

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F56A3.4 5171494 5171589 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004955 spd-5 F56A3.4 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:F56A3.4 5171494 5171589 -1
CDS:F56A3.4 5171641 5171972 -1
CDS:F56A3.4 5172023 5172273 -1
CDS:F56A3.4 5172323 5173208 -1
CDS:F56A3.4 5173252 5173465 -1
CDS:F56A3.4 5173514 5173911 -1
CDS:F56A3.4 5173957 5174038 -1
CDS:F56A3.4 5174086 5175183 -1
CDS:F56A3.4 5175231 5175418 -1
CDS:F56A3.4 5175470 5175521 -1

1 Sequence

Length
3597

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F56A3.4.2 F56A3.4.2 4003   I: 5171275-5175708
Transcript:F56A3.4.1 F56A3.4.1 3878   I: 5171285-5176654