WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56A3.3a.1 Sequence Name  F56A3.3a.1
Length (nt)  4758   Chromosome Location  I: 5176836-5182647
Chromosome . Primary Identifier  I Chromosome Location . Start  5176836
Chromosome Location . End  5182647 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56A3.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003792 npp-6 F56A3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56A3.3a F56A3.3a 4569   I: 5176836-5176917

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56A3.3a.1 5176836 5182647 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11942   82   I: 5176836-5176917 Caenorhabditis elegans
Exon11943   305   I: 5176972-5177276 Caenorhabditis elegans
Exon11946   126   I: 5177325-5177450 Caenorhabditis elegans
Exon11949   644   I: 5177501-5178144 Caenorhabditis elegans
Exon11952   331   I: 5178203-5178533 Caenorhabditis elegans
Exon11955   188   I: 5178579-5178766 Caenorhabditis elegans
Exon11958   292   I: 5178825-5179116 Caenorhabditis elegans
Exon11961   324   I: 5179529-5179852 Caenorhabditis elegans
Exon11966   119   I: 5179906-5180024 Caenorhabditis elegans
Exon11968   887   I: 5180071-5180957 Caenorhabditis elegans
Exon11971   135   I: 5181003-5181137 Caenorhabditis elegans
Exon11974   349   I: 5181180-5181528 Caenorhabditis elegans
Exon11977   147   I: 5181574-5181720 Caenorhabditis elegans
Exon11980   304   I: 5181768-5182071 Caenorhabditis elegans
Exon11984   525   I: 5182123-5182647 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56A3.3a.1 5176836 5182647 1

1 Sequence

Length
4758

1 Sequence Ontology Term

Identifier Name Description
transcript