WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F56A3.3a Sequence Name  F56A3.3a
Length (nt)  4569   Chromosome Location  I: 5176836-5176917
Chromosome . Primary Identifier  I Chromosome Location . Start  5176836
Chromosome Location . End  5176917
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56A3.3a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE53750 NPP-6, isoform a 171.5 1522 Caenorhabditis elegans
 

Other

22 RNAi

WormBase ID
WBRNAi00091604
WBRNAi00094125
WBRNAi00094267
WBRNAi00090954
WBRNAi00091602
WBRNAi00087681
WBRNAi00070976
WBRNAi00060431
WBRNAi00060432
WBRNAi00078411
WBRNAi00025691
WBRNAi00000066
WBRNAi00001988
WBRNAi00025692
WBRNAi00114577
WBRNAi00048585
WBRNAi00117452
WBRNAi00060429
WBRNAi00060430
WBRNAi00065730
WBRNAi00094514
WBRNAi00081300

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F56A3.3a 5176836 5176917 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003792 npp-6 F56A3.3 Caenorhabditis elegans

15 Locations


Feature . Primary Identifier
Start End Strand
CDS:F56A3.3a 5176836 5176917 1
CDS:F56A3.3a 5176972 5177276 1
CDS:F56A3.3a 5177325 5177450 1
CDS:F56A3.3a 5177501 5178144 1
CDS:F56A3.3a 5178203 5178533 1
CDS:F56A3.3a 5178579 5178766 1
CDS:F56A3.3a 5178825 5179116 1
CDS:F56A3.3a 5179529 5179852 1
CDS:F56A3.3a 5179906 5180024 1
CDS:F56A3.3a 5180071 5180957 1
CDS:F56A3.3a 5181003 5181137 1
CDS:F56A3.3a 5181180 5181528 1
CDS:F56A3.3a 5181574 5181720 1
CDS:F56A3.3a 5181768 5182071 1
CDS:F56A3.3a 5182123 5182458 1

1 Sequence

Length
4569

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F56A3.3a.2 F56A3.3a.2 4752   I: 5176829-5182801
Transcript:F56A3.3a.1 F56A3.3a.1 4758   I: 5176836-5182647