WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55A12.3.3 Sequence Name  F55A12.3.3
Length (nt)  2834   Chromosome Location  I: 5358512-5365132
Chromosome . Primary Identifier  I Chromosome Location . Start  5358512
Chromosome Location . End  5365132 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55A12.3.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004087 ppk-1 F55A12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55A12.3 F55A12.3 1836   I: 5358525-5358579

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F55A12.3.3 5358512 5365132 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon12484   68   I: 5358512-5358579 Caenorhabditis elegans
Exon12488   41   I: 5358629-5358669 Caenorhabditis elegans
Exon12491   205   I: 5358718-5358922 Caenorhabditis elegans
Exon12494   76   I: 5358975-5359050 Caenorhabditis elegans
Exon12497   118   I: 5359097-5359214 Caenorhabditis elegans
Exon12500   153   I: 5359268-5359420 Caenorhabditis elegans
Exon12503   565   I: 5359807-5360371 Caenorhabditis elegans
Exon12506   77   I: 5360427-5360503 Caenorhabditis elegans
Exon12509   85   I: 5360713-5360797 Caenorhabditis elegans
Exon12512   255   I: 5363016-5363270 Caenorhabditis elegans
Exon12515   104   I: 5363890-5363993 Caenorhabditis elegans
Exon12518   1087   I: 5364046-5365132 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F55A12.3.3 5358512 5365132 1

1 Sequence

Length
2834

1 Sequence Ontology Term

Identifier Name Description
transcript