WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55A12.3.1 Sequence Name  F55A12.3.1
Length (nt)  2403   Chromosome Location  I: 5358522-5365173
Chromosome . Primary Identifier  I Chromosome Location . Start  5358522
Chromosome Location . End  5365173 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55A12.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004087 ppk-1 F55A12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55A12.3 F55A12.3 1836   I: 5358525-5358579

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F55A12.3.1 5358522 5365173 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon12485   58   I: 5358522-5358579 Caenorhabditis elegans
Exon12486   41   I: 5358629-5358669 Caenorhabditis elegans
Exon12489   205   I: 5358718-5358922 Caenorhabditis elegans
Exon12492   76   I: 5358975-5359050 Caenorhabditis elegans
Exon12495   118   I: 5359097-5359214 Caenorhabditis elegans
Exon12498   153   I: 5359268-5359420 Caenorhabditis elegans
Exon12501   565   I: 5359807-5360371 Caenorhabditis elegans
Exon12504   77   I: 5360427-5360503 Caenorhabditis elegans
Exon12507   85   I: 5360713-5360797 Caenorhabditis elegans
Exon12510   255   I: 5363016-5363270 Caenorhabditis elegans
Exon12513   104   I: 5363890-5363993 Caenorhabditis elegans
Exon12516   163   I: 5364046-5364208 Caenorhabditis elegans
Exon12519   503   I: 5364671-5365173 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F55A12.3.1 5358522 5365173 1

1 Sequence

Length
2403

1 Sequence Ontology Term

Identifier Name Description
transcript