WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F27C1.11a.1 Sequence Name  F27C1.11a.1
Length (nt)  3992   Chromosome Location  I: 5433906-5443026
Chromosome . Primary Identifier  I Chromosome Location . Start  5433906
Chromosome Location . End  5443026 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F27C1.11a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017858 F27C1.11 F27C1.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F27C1.11a F27C1.11a 3807   I: 5434091-5434181

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F27C1.11a.1 5433906 5443026 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon12795   276   I: 5433906-5434181 Caenorhabditis elegans
Exon12796   68   I: 5434233-5434300 Caenorhabditis elegans
Exon12798   78   I: 5434344-5434421 Caenorhabditis elegans
Exon12803   134   I: 5435812-5435945 Caenorhabditis elegans
Exon12805   118   I: 5436136-5436253 Caenorhabditis elegans
Exon12807   87   I: 5436363-5436449 Caenorhabditis elegans
Exon12809   135   I: 5436492-5436626 Caenorhabditis elegans
Exon12811   92   I: 5436674-5436765 Caenorhabditis elegans
Exon12813   130   I: 5436815-5436944 Caenorhabditis elegans
Exon12815   101   I: 5437468-5437568 Caenorhabditis elegans
Exon12817   79   I: 5437618-5437696 Caenorhabditis elegans
Exon12819   170   I: 5437747-5437916 Caenorhabditis elegans
Exon12821   101   I: 5438098-5438198 Caenorhabditis elegans
Exon12823   208   I: 5438252-5438459 Caenorhabditis elegans
Exon12825   81   I: 5438506-5438586 Caenorhabditis elegans
Exon12827   210   I: 5438952-5439161 Caenorhabditis elegans
Exon12829   124   I: 5439209-5439332 Caenorhabditis elegans
Exon12831   119   I: 5439637-5439755 Caenorhabditis elegans
Exon12833   193   I: 5439813-5440005 Caenorhabditis elegans
Exon12835   366   I: 5440049-5440414 Caenorhabditis elegans
Exon12837   236   I: 5440478-5440713 Caenorhabditis elegans
Exon12839   128   I: 5440906-5441033 Caenorhabditis elegans
Exon12841   300   I: 5441082-5441381 Caenorhabditis elegans
Exon12843   73   I: 5441635-5441707 Caenorhabditis elegans
Exon12845   115   I: 5441769-5441883 Caenorhabditis elegans
Exon12847   81   I: 5442099-5442179 Caenorhabditis elegans
Exon12849   108   I: 5442312-5442419 Caenorhabditis elegans
Exon12851   81   I: 5442946-5443026 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F27C1.11a.1 5433906 5443026 -1

1 Sequence

Length
3992

1 Sequence Ontology Term

Identifier Name Description
transcript