WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D4.1a.1 Sequence Name  C09D4.1a.1
Length (nt)  2377   Chromosome Location  I: 5497679-5505460
Chromosome . Primary Identifier  I Chromosome Location . Start  5497679
Chromosome Location . End  5505460 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D4.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015632 C09D4.1 C09D4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D4.1a C09D4.1a 1761   I: 5497917-5497961

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D4.1a.1 5497679 5505460 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon12987   283   I: 5497679-5497961 Caenorhabditis elegans
Exon12989   147   I: 5498850-5498996 Caenorhabditis elegans
Exon12993   213   I: 5499170-5499382 Caenorhabditis elegans
Exon12996   149   I: 5499886-5500034 Caenorhabditis elegans
Exon13000   69   I: 5500085-5500153 Caenorhabditis elegans
Exon13004   98   I: 5501530-5501627 Caenorhabditis elegans
Exon13008   285   I: 5501673-5501957 Caenorhabditis elegans
Exon13012   141   I: 5502014-5502154 Caenorhabditis elegans
Exon13016   71   I: 5503058-5503128 Caenorhabditis elegans
Exon13020   212   I: 5503182-5503393 Caenorhabditis elegans
Exon13024   106   I: 5503504-5503609 Caenorhabditis elegans
Exon13028   112   I: 5504253-5504364 Caenorhabditis elegans
Exon13032   59   I: 5504920-5504978 Caenorhabditis elegans
Exon13039   432   I: 5505029-5505460 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D4.1a.1 5497679 5505460 1

1 Sequence

Length
2377

1 Sequence Ontology Term

Identifier Name Description
transcript