WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D4.1b.2 Sequence Name  C09D4.1b.2
Length (nt)  1877   Chromosome Location  I: 5498453-5505140
Chromosome . Primary Identifier  I Chromosome Location . Start  5498453
Chromosome Location . End  5505140 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D4.1b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015632 C09D4.1 C09D4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D4.1b C09D4.1b 1428   I: 5499311-5499382

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D4.1b.2 5498453 5505140 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon12988   103   I: 5498453-5498555 Caenorhabditis elegans
Exon12990   147   I: 5498850-5498996 Caenorhabditis elegans
Exon12995   213   I: 5499170-5499382 Caenorhabditis elegans
Exon12998   149   I: 5499886-5500034 Caenorhabditis elegans
Exon13002   69   I: 5500085-5500153 Caenorhabditis elegans
Exon13006   98   I: 5501530-5501627 Caenorhabditis elegans
Exon13010   285   I: 5501673-5501957 Caenorhabditis elegans
Exon13014   141   I: 5502014-5502154 Caenorhabditis elegans
Exon13018   71   I: 5503058-5503128 Caenorhabditis elegans
Exon13022   212   I: 5503182-5503393 Caenorhabditis elegans
Exon13026   106   I: 5503504-5503609 Caenorhabditis elegans
Exon13030   112   I: 5504253-5504364 Caenorhabditis elegans
Exon13034   59   I: 5504920-5504978 Caenorhabditis elegans
Exon13036   112   I: 5505029-5505140 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D4.1b.2 5498453 5505140 1

1 Sequence

Length
1877

1 Sequence Ontology Term

Identifier Name Description
transcript