WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M01E11.7c.3 Sequence Name  M01E11.7c.3
Length (nt)  3561   Chromosome Location  I: 5583407-5600999
Chromosome . Primary Identifier  I Chromosome Location . Start  5583407
Chromosome Location . End  5600999 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M01E11.7c.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006508 tns-1 M01E11.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M01E11.7c M01E11.7c 2850   I: 5583731-5583926

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M01E11.7c.3 5583407 5600999 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon13420   520   I: 5583407-5583926 Caenorhabditis elegans
Exon13433   110   I: 5583981-5584090 Caenorhabditis elegans
Exon13442   134   I: 5584484-5584617 Caenorhabditis elegans
Exon13451   148   I: 5584663-5584810 Caenorhabditis elegans
Exon13460   80   I: 5585998-5586077 Caenorhabditis elegans
Exon13470   120   I: 5586137-5586256 Caenorhabditis elegans
Exon13479   87   I: 5587842-5587928 Caenorhabditis elegans
Exon13490   68   I: 5591551-5591618 Caenorhabditis elegans
Exon13499   164   I: 5591677-5591840 Caenorhabditis elegans
Exon13506   240   I: 5592871-5593110 Caenorhabditis elegans
Exon13513   193   I: 5593310-5593502 Caenorhabditis elegans
Exon13521   197   I: 5593584-5593780 Caenorhabditis elegans
Exon13527   316   I: 5595571-5595886 Caenorhabditis elegans
Exon13533   150   I: 5595939-5596088 Caenorhabditis elegans
Exon13539   531   I: 5596395-5596925 Caenorhabditis elegans
Exon13545   226   I: 5597135-5597360 Caenorhabditis elegans
Exon13550   144   I: 5600674-5600817 Caenorhabditis elegans
Exon13555   133   I: 5600867-5600999 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M01E11.7c.3 5583407 5600999 -1

1 Sequence

Length
3561

1 Sequence Ontology Term

Identifier Name Description
transcript