WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M01E11.7c.1 Sequence Name  M01E11.7c.1
Length (nt)  3284   Chromosome Location  I: 5583407-5597360
Chromosome . Primary Identifier  I Chromosome Location . Start  5583407
Chromosome Location . End  5597360 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M01E11.7c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006508 tns-1 M01E11.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M01E11.7c M01E11.7c 2850   I: 5583731-5583926

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M01E11.7c.1 5583407 5597360 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon13422   520   I: 5583407-5583926 Caenorhabditis elegans
Exon13431   110   I: 5583981-5584090 Caenorhabditis elegans
Exon13440   134   I: 5584484-5584617 Caenorhabditis elegans
Exon13449   148   I: 5584663-5584810 Caenorhabditis elegans
Exon13458   80   I: 5585998-5586077 Caenorhabditis elegans
Exon13468   120   I: 5586137-5586256 Caenorhabditis elegans
Exon13477   87   I: 5587842-5587928 Caenorhabditis elegans
Exon13488   68   I: 5591551-5591618 Caenorhabditis elegans
Exon13497   164   I: 5591677-5591840 Caenorhabditis elegans
Exon13504   240   I: 5592871-5593110 Caenorhabditis elegans
Exon13511   193   I: 5593310-5593502 Caenorhabditis elegans
Exon13519   197   I: 5593584-5593780 Caenorhabditis elegans
Exon13525   316   I: 5595571-5595886 Caenorhabditis elegans
Exon13531   150   I: 5595939-5596088 Caenorhabditis elegans
Exon13537   531   I: 5596395-5596925 Caenorhabditis elegans
Exon13543   226   I: 5597135-5597360 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M01E11.7c.1 5583407 5597360 -1

1 Sequence

Length
3284

1 Sequence Ontology Term

Identifier Name Description
transcript