WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46F11.9a.1 Sequence Name  F46F11.9a.1
Length (nt)  4099   Chromosome Location  I: 5610374-5616402
Chromosome . Primary Identifier  I Chromosome Location . Start  5610374
Chromosome Location . End  5616402 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46F11.9a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018512 trpp-8 F46F11.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46F11.9a F46F11.9a 3843   I: 5610608-5610658

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46F11.9a.1 5610374 5616402 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon13581   285   I: 5610374-5610658 Caenorhabditis elegans
Exon13583   377   I: 5611195-5611571 Caenorhabditis elegans
Exon13586   1000   I: 5612463-5613462 Caenorhabditis elegans
Exon13588   812   I: 5613519-5614330 Caenorhabditis elegans
Exon13590   248   I: 5614437-5614684 Caenorhabditis elegans
Exon13592   395   I: 5614735-5615129 Caenorhabditis elegans
Exon13594   317   I: 5615268-5615584 Caenorhabditis elegans
Exon13596   208   I: 5615636-5615843 Caenorhabditis elegans
Exon13598   189   I: 5615888-5616076 Caenorhabditis elegans
Exon13600   268   I: 5616135-5616402 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46F11.9a.1 5610374 5616402 -1

1 Sequence

Length
4099

1 Sequence Ontology Term

Identifier Name Description
transcript