WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F46F11.9a Sequence Name  F46F11.9a
Length (nt)  3843   Chromosome Location  I: 5610608-5610658
Chromosome . Primary Identifier  I Chromosome Location . Start  5610608
Chromosome Location . End  5610658
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46F11.9a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE30536 TRPP-8, isoform a 142.8 1280 Caenorhabditis elegans
 

Other

9 RNAi

WormBase ID
WBRNAi00025537
WBRNAi00025538
WBRNAi00066102
WBRNAi00047538
WBRNAi00022366
WBRNAi00084971
WBRNAi00032369
WBRNAi00000649
WBRNAi00117074

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F46F11.9a 5610608 5610658 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018512 trpp-8 F46F11.9 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:F46F11.9a 5610608 5610658 -1
CDS:F46F11.9a 5611195 5611571 -1
CDS:F46F11.9a 5612463 5613462 -1
CDS:F46F11.9a 5613519 5614330 -1
CDS:F46F11.9a 5614437 5614684 -1
CDS:F46F11.9a 5614735 5615129 -1
CDS:F46F11.9a 5615268 5615584 -1
CDS:F46F11.9a 5615636 5615843 -1
CDS:F46F11.9a 5615888 5616076 -1
CDS:F46F11.9a 5616135 5616380 -1

1 Sequence

Length
3843

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F46F11.9a.1 F46F11.9a.1 4099   I: 5610374-5616402