WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46F11.1a.1 Sequence Name  F46F11.1a.1
Length (nt)  4104   Chromosome Location  I: 5627819-5637621
Chromosome . Primary Identifier  I Chromosome Location . Start  5627819
Chromosome Location . End  5637621 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46F11.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018508 F46F11.1 F46F11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46F11.1a F46F11.1a 3972   I: 5627826-5627873

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46F11.1a.1 5627819 5637621 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon13633   55   I: 5627819-5627873 Caenorhabditis elegans
Exon13634   87   I: 5627921-5628007 Caenorhabditis elegans
Exon13636   117   I: 5628066-5628182 Caenorhabditis elegans
Exon13638   66   I: 5628227-5628292 Caenorhabditis elegans
Exon13640   249   I: 5628340-5628588 Caenorhabditis elegans
Exon13642   366   I: 5629908-5630273 Caenorhabditis elegans
Exon13644   354   I: 5630512-5630865 Caenorhabditis elegans
Exon13646   134   I: 5631131-5631264 Caenorhabditis elegans
Exon13648   146   I: 5631646-5631791 Caenorhabditis elegans
Exon13650   242   I: 5631991-5632232 Caenorhabditis elegans
Exon13652   417   I: 5632279-5632695 Caenorhabditis elegans
Exon13654   357   I: 5632759-5633115 Caenorhabditis elegans
Exon13656   218   I: 5633519-5633736 Caenorhabditis elegans
Exon13658   73   I: 5633791-5633863 Caenorhabditis elegans
Exon13660   146   I: 5633912-5634057 Caenorhabditis elegans
Exon13662   110   I: 5634126-5634235 Caenorhabditis elegans
Exon13664   65   I: 5634403-5634467 Caenorhabditis elegans
Exon13665   60   I: 5634535-5634594 Caenorhabditis elegans
Exon13666   220   I: 5635180-5635399 Caenorhabditis elegans
Exon13668   54   I: 5636717-5636770 Caenorhabditis elegans
Exon13670   102   I: 5636867-5636968 Caenorhabditis elegans
Exon13672   102   I: 5637018-5637119 Caenorhabditis elegans
Exon13675   364   I: 5637258-5637621 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46F11.1a.1 5627819 5637621 1

1 Sequence

Length
4104

1 Sequence Ontology Term

Identifier Name Description
transcript