WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T19B4.1.1 Sequence Name  T19B4.1.1
Length (nt)  1994   Chromosome Location  I: 5702156-5705553
Chromosome . Primary Identifier  I Chromosome Location . Start  5702156
Chromosome Location . End  5705553 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T19B4.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020556 pamn-1 T19B4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T19B4.1 T19B4.1 1992   I: 5702158-5702295

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T19B4.1.1 5702156 5705553 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon13829   140   I: 5702156-5702295 Caenorhabditis elegans
Exon13830   49   I: 5702773-5702821 Caenorhabditis elegans
Exon13831   153   I: 5703120-5703272 Caenorhabditis elegans
Exon13832   227   I: 5703316-5703542 Caenorhabditis elegans
Exon13833   257   I: 5703587-5703843 Caenorhabditis elegans
Exon13834   327   I: 5703969-5704295 Caenorhabditis elegans
Exon13835   293   I: 5704341-5704633 Caenorhabditis elegans
Exon13836   89   I: 5704686-5704774 Caenorhabditis elegans
Exon13837   158   I: 5704849-5705006 Caenorhabditis elegans
Exon13838   67   I: 5705122-5705188 Caenorhabditis elegans
Exon13839   213   I: 5705240-5705452 Caenorhabditis elegans
Exon13840   21   I: 5705533-5705553 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T19B4.1.1 5702156 5705553 1

1 Sequence

Length
1994

1 Sequence Ontology Term

Identifier Name Description
transcript