WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C34G6.4a.1 Sequence Name  C34G6.4a.1
Length (nt)  4164   Chromosome Location  I: 5886613-5895969
Chromosome . Primary Identifier  I Chromosome Location . Start  5886613
Chromosome Location . End  5895969 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C34G6.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003996 pgp-2 C34G6.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34G6.4a C34G6.4a 3819   I: 5886625-5886698

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C34G6.4a.1 5886613 5895969 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon14333   86   I: 5886613-5886698 Caenorhabditis elegans
Exon14337   155   I: 5889037-5889191 Caenorhabditis elegans
Exon14341   100   I: 5890044-5890143 Caenorhabditis elegans
Exon14345   219   I: 5890363-5890581 Caenorhabditis elegans
Exon14349   472   I: 5890750-5891221 Caenorhabditis elegans
Exon14353   619   I: 5891424-5892042 Caenorhabditis elegans
Exon14357   303   I: 5892173-5892475 Caenorhabditis elegans
Exon14361   113   I: 5892520-5892632 Caenorhabditis elegans
Exon14367   147   I: 5893424-5893570 Caenorhabditis elegans
Exon14371   954   I: 5893620-5894573 Caenorhabditis elegans
Exon14375   105   I: 5894814-5894918 Caenorhabditis elegans
Exon14379   204   I: 5894966-5895169 Caenorhabditis elegans
Exon14383   147   I: 5895216-5895362 Caenorhabditis elegans
Exon14388   540   I: 5895430-5895969 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C34G6.4a.1 5886613 5895969 1

1 Sequence

Length
4164

1 Sequence Ontology Term

Identifier Name Description
transcript