WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27A12.9.1 Sequence Name  C27A12.9.1
Length (nt)  2804   Chromosome Location  I: 6061732-6068040
Chromosome . Primary Identifier  I Chromosome Location . Start  6061732
Chromosome Location . End  6068040 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27A12.9.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016159 pigo-1 C27A12.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27A12.9 C27A12.9 2652   I: 6061876-6062130

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C27A12.9.1 6061732 6068040 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon14912   399   I: 6061732-6062130 Caenorhabditis elegans
Exon14913   221   I: 6062175-6062395 Caenorhabditis elegans
Exon14914   125   I: 6062443-6062567 Caenorhabditis elegans
Exon14915   163   I: 6062630-6062792 Caenorhabditis elegans
Exon14916   129   I: 6062834-6062962 Caenorhabditis elegans
Exon14917   194   I: 6063273-6063466 Caenorhabditis elegans
Exon14918   124   I: 6063516-6063639 Caenorhabditis elegans
Exon14923   103   I: 6065288-6065390 Caenorhabditis elegans
Exon14924   108   I: 6065442-6065549 Caenorhabditis elegans
Exon14925   118   I: 6065609-6065726 Caenorhabditis elegans
Exon14926   90   I: 6065791-6065880 Caenorhabditis elegans
Exon14927   302   I: 6065995-6066296 Caenorhabditis elegans
Exon14928   125   I: 6066341-6066465 Caenorhabditis elegans
Exon14929   92   I: 6066807-6066898 Caenorhabditis elegans
Exon14930   140   I: 6067268-6067407 Caenorhabditis elegans
Exon14931   87   I: 6067495-6067581 Caenorhabditis elegans
Exon14932   105   I: 6067627-6067731 Caenorhabditis elegans
Exon14933   179   I: 6067862-6068040 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C27A12.9.1 6061732 6068040 -1

1 Sequence

Length
2804

1 Sequence Ontology Term

Identifier Name Description
transcript