WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48E7.5.1 Sequence Name  C48E7.5.1
Length (nt)  1633   Chromosome Location  I: 6250475-6252876
Chromosome . Primary Identifier  I Chromosome Location . Start  6250475
Chromosome Location . End  6252876 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48E7.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000583 cof-2 C48E7.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48E7.5 C48E7.5 1461   I: 6250571-6250647

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48E7.5.1 6250475 6252876 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon15537   173   I: 6250475-6250647 Caenorhabditis elegans
Exon15538   397   I: 6250707-6251103 Caenorhabditis elegans
Exon15539   93   I: 6251260-6251352 Caenorhabditis elegans
Exon15540   124   I: 6251395-6251518 Caenorhabditis elegans
Exon15541   98   I: 6251563-6251660 Caenorhabditis elegans
Exon15542   98   I: 6251919-6252016 Caenorhabditis elegans
Exon15543   160   I: 6252073-6252232 Caenorhabditis elegans
Exon15544   105   I: 6252275-6252379 Caenorhabditis elegans
Exon15545   102   I: 6252428-6252529 Caenorhabditis elegans
Exon15546   283   I: 6252594-6252876 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48E7.5.1 6250475 6252876 1

1 Sequence

Length
1633

1 Sequence Ontology Term

Identifier Name Description
transcript