WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K06A5.8d.1 Sequence Name  K06A5.8d.1
Length (nt)  3760   Chromosome Location  I: 6473860-6488977
Chromosome . Primary Identifier  I Chromosome Location . Start  6473860
Chromosome Location . End  6488977 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K06A5.8d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019434 nmtn-1 K06A5.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K06A5.8d K06A5.8d 1680   I: 6477369-6477526

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K06A5.8d.1 6473860 6488977 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon16265   653   I: 6473860-6474512 Caenorhabditis elegans
Exon16291   119   I: 6476751-6476869 Caenorhabditis elegans
Exon16297   609   I: 6476918-6477526 Caenorhabditis elegans
Exon16312   171   I: 6478036-6478206 Caenorhabditis elegans
Exon16317   107   I: 6478254-6478360 Caenorhabditis elegans
Exon16322   69   I: 6478695-6478763 Caenorhabditis elegans
Exon16327   123   I: 6478811-6478933 Caenorhabditis elegans
Exon16332   164   I: 6478983-6479146 Caenorhabditis elegans
Exon16337   146   I: 6479702-6479847 Caenorhabditis elegans
Exon16365   128   I: 6485928-6486055 Caenorhabditis elegans
Exon16370   105   I: 6486215-6486319 Caenorhabditis elegans
Exon16375   438   I: 6486365-6486802 Caenorhabditis elegans
Exon16380   179   I: 6487015-6487193 Caenorhabditis elegans
Exon16385   147   I: 6487635-6487781 Caenorhabditis elegans
Exon16390   156   I: 6487831-6487986 Caenorhabditis elegans
Exon16395   88   I: 6488038-6488125 Caenorhabditis elegans
Exon16400   155   I: 6488257-6488411 Caenorhabditis elegans
Exon16405   203   I: 6488775-6488977 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K06A5.8d.1 6473860 6488977 -1

1 Sequence

Length
3760

1 Sequence Ontology Term

Identifier Name Description
transcript