WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:K06A5.8d Sequence Name  K06A5.8d
Length (nt)  1680   Chromosome Location  I: 6477369-6477526
Chromosome . Primary Identifier  I Chromosome Location . Start  6477369
Chromosome Location . End  6477526
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K06A5.8d

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE33139 NMTN-1, isoform d 61.0 559 Caenorhabditis elegans
 

Other

8 RNAi

WormBase ID
WBRNAi00002220
WBRNAi00050033
WBRNAi00003244
WBRNAi00003939
WBRNAi00030183
WBRNAi00108515
WBRNAi00108776
WBRNAi00108762

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:K06A5.8d 6477369 6477526 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019434 nmtn-1 K06A5.8 Caenorhabditis elegans

11 Locations


Feature . Primary Identifier
Start End Strand
CDS:K06A5.8d 6477369 6477526 -1
CDS:K06A5.8d 6478036 6478206 -1
CDS:K06A5.8d 6478254 6478360 -1
CDS:K06A5.8d 6478695 6478763 -1
CDS:K06A5.8d 6478811 6478933 -1
CDS:K06A5.8d 6478983 6479146 -1
CDS:K06A5.8d 6479702 6479847 -1
CDS:K06A5.8d 6485928 6486055 -1
CDS:K06A5.8d 6486215 6486319 -1
CDS:K06A5.8d 6486365 6486802 -1
CDS:K06A5.8d 6487015 6487085 -1

1 Sequence

Length
1680

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K06A5.8d.1 K06A5.8d.1 3760   I: 6473860-6488977
Transcript:K06A5.8d.2 K06A5.8d.2 2996   I: 6476738-6488977