WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57B10.4c.1 Sequence Name  F57B10.4c.1
Length (nt)  2315   Chromosome Location  I: 6566125-6568954
Chromosome . Primary Identifier  I Chromosome Location . Start  6566125
Chromosome Location . End  6568954 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57B10.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019002 syp-6 F57B10.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57B10.4c F57B10.4c 2079   I: 6566173-6566231

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F57B10.4c.1 6566125 6568954 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon16642   107   I: 6566125-6566231 Caenorhabditis elegans
Exon16648   74   I: 6566277-6566350 Caenorhabditis elegans
Exon16652   126   I: 6566397-6566522 Caenorhabditis elegans
Exon16656   389   I: 6566570-6566958 Caenorhabditis elegans
Exon16660   486   I: 6567002-6567487 Caenorhabditis elegans
Exon16664   145   I: 6567532-6567676 Caenorhabditis elegans
Exon16669   357   I: 6567832-6568188 Caenorhabditis elegans
Exon16673   303   I: 6568232-6568534 Caenorhabditis elegans
Exon16676   80   I: 6568580-6568659 Caenorhabditis elegans
Exon16681   248   I: 6568707-6568954 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F57B10.4c.1 6566125 6568954 1

1 Sequence

Length
2315

1 Sequence Ontology Term

Identifier Name Description
transcript