WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C48B6.6a Sequence Name  C48B6.6a
Length (nt)  6969   Chromosome Location  I: 6901549-6901626
Chromosome . Primary Identifier  I Chromosome Location . Start  6901549
Chromosome Location . End  6901626
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48B6.6a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE30258 SMG-1, isoform a 265.5 2322 Caenorhabditis elegans
 

Other

20 RNAi

WormBase ID
WBRNAi00094402
WBRNAi00042725
WBRNAi00042726
WBRNAi00024855
WBRNAi00024857
WBRNAi00024858
WBRNAi00024859
WBRNAi00003189
WBRNAi00003190
WBRNAi00024856
WBRNAi00094389
WBRNAi00060308
WBRNAi00060309
WBRNAi00060310
WBRNAi00060311
WBRNAi00080016
WBRNAi00080017
WBRNAi00094414
WBRNAi00094499
WBRNAi00116444

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C48B6.6a 6901549 6901626 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004879 smg-1 C48B6.6 Caenorhabditis elegans

42 Locations


Feature . Primary Identifier
Start End Strand
CDS:C48B6.6a 6901549 6901626 -1
CDS:C48B6.6a 6901706 6901839 -1
CDS:C48B6.6a 6901884 6901981 -1
CDS:C48B6.6a 6902055 6902135 -1
CDS:C48B6.6a 6902256 6902416 -1
CDS:C48B6.6a 6902492 6902579 -1
CDS:C48B6.6a 6902657 6903009 -1
CDS:C48B6.6a 6903114 6903410 -1
CDS:C48B6.6a 6903459 6903563 -1
CDS:C48B6.6a 6903650 6903887 -1
CDS:C48B6.6a 6903988 6904136 -1
CDS:C48B6.6a 6904182 6904265 -1
CDS:C48B6.6a 6904508 6904678 -1
CDS:C48B6.6a 6904723 6905007 -1
CDS:C48B6.6a 6905054 6905232 -1
CDS:C48B6.6a 6905781 6905901 -1
CDS:C48B6.6a 6905955 6906099 -1
CDS:C48B6.6a 6906145 6906440 -1
CDS:C48B6.6a 6906544 6906689 -1
CDS:C48B6.6a 6906736 6907020 -1
CDS:C48B6.6a 6907116 6907381 -1
CDS:C48B6.6a 6907588 6907713 -1
CDS:C48B6.6a 6907786 6907895 -1
CDS:C48B6.6a 6907943 6908030 -1
CDS:C48B6.6a 6908081 6908310 -1
CDS:C48B6.6a 6908392 6908499 -1
CDS:C48B6.6a 6908541 6908764 -1
CDS:C48B6.6a 6908839 6909041 -1
CDS:C48B6.6a 6909087 6909221 -1
CDS:C48B6.6a 6909917 6910069 -1

1 Sequence

Length
6969

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C48B6.6a.1 C48B6.6a.1 7597   I: 6900949-6913579