WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F07A5.3.1 Sequence Name  F07A5.3.1
Length (nt)  1862   Chromosome Location  I: 7354491-7357213
Chromosome . Primary Identifier  I Chromosome Location . Start  7354491
Chromosome Location . End  7357213 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F07A5.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008542 scav-6 F07A5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F07A5.3 F07A5.3 1773   I: 7354494-7354619

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F07A5.3.1 7354491 7357213 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon18756   129   I: 7354491-7354619 Caenorhabditis elegans
Exon18757   176   I: 7354668-7354843 Caenorhabditis elegans
Exon18758   151   I: 7354894-7355044 Caenorhabditis elegans
Exon18759   101   I: 7355112-7355212 Caenorhabditis elegans
Exon18760   70   I: 7355258-7355327 Caenorhabditis elegans
Exon18761   96   I: 7355373-7355468 Caenorhabditis elegans
Exon18762   148   I: 7355538-7355685 Caenorhabditis elegans
Exon18763   130   I: 7355780-7355909 Caenorhabditis elegans
Exon18764   111   I: 7355955-7356065 Caenorhabditis elegans
Exon18765   277   I: 7356367-7356643 Caenorhabditis elegans
Exon18766   74   I: 7356695-7356768 Caenorhabditis elegans
Exon18767   399   I: 7356815-7357213 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F07A5.3.1 7354491 7357213 1

1 Sequence

Length
1862

1 Sequence Ontology Term

Identifier Name Description
transcript