WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28F4.4a.2 Sequence Name  T28F4.4a.2
Length (nt)  3000   Chromosome Location  I: 7486648-7494315
Chromosome . Primary Identifier  I Chromosome Location . Start  7486648
Chromosome Location . End  7494315 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F4.4a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012139 T28F4.4 T28F4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28F4.4a T28F4.4a 2154   I: 7486801-7486945

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T28F4.4a.2 7486648 7494315 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon19227   298   I: 7486648-7486945 Caenorhabditis elegans
Exon19233   134   I: 7487161-7487294 Caenorhabditis elegans
Exon19238   171   I: 7487342-7487512 Caenorhabditis elegans
Exon19243   172   I: 7487996-7488167 Caenorhabditis elegans
Exon19248   611   I: 7488211-7488821 Caenorhabditis elegans
Exon19253   112   I: 7489045-7489156 Caenorhabditis elegans
Exon19258   182   I: 7489214-7489395 Caenorhabditis elegans
Exon19263   394   I: 7489441-7489834 Caenorhabditis elegans
Exon19268   102   I: 7489885-7489986 Caenorhabditis elegans
Exon19274   137   I: 7490037-7490173 Caenorhabditis elegans
Exon19284   221   I: 7492944-7493164 Caenorhabditis elegans
Exon19288   122   I: 7493745-7493866 Caenorhabditis elegans
Exon19292   290   I: 7493923-7494212 Caenorhabditis elegans
Exon19295   54   I: 7494262-7494315 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T28F4.4a.2 7486648 7494315 -1

1 Sequence

Length
3000

1 Sequence Ontology Term

Identifier Name Description
transcript