WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T28F4.4a Sequence Name  T28F4.4a
Length (nt)  2154   Chromosome Location  I: 7486801-7486945
Chromosome . Primary Identifier  I Chromosome Location . Start  7486801
Chromosome Location . End  7486945
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F4.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE06526 T28F4.4, isoform a 81.3 717 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00054443
WBRNAi00004347
WBRNAi00036104

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T28F4.4a 7486801 7486945 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012139 T28F4.4 T28F4.4 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:T28F4.4a 7486801 7486945 -1
CDS:T28F4.4a 7487161 7487294 -1
CDS:T28F4.4a 7487342 7487512 -1
CDS:T28F4.4a 7487996 7488167 -1
CDS:T28F4.4a 7488211 7488821 -1
CDS:T28F4.4a 7489045 7489156 -1
CDS:T28F4.4a 7489214 7489395 -1
CDS:T28F4.4a 7489441 7489834 -1
CDS:T28F4.4a 7489885 7489986 -1
CDS:T28F4.4a 7490037 7490167 -1

1 Sequence

Length
2154

1 Sequence Ontology Term

Identifier Name Description
CDS  

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T28F4.4a.2 T28F4.4a.2 3000   I: 7486648-7494315
Transcript:T28F4.4a.3 T28F4.4a.3 2948   I: 7486648-7494214
Transcript:T28F4.4a.1 T28F4.4a.1 3055   I: 7486648-7494736
Transcript:T28F4.4a.4 T28F4.4a.4 2317   I: 7486648-7490177