WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28F4.4a.3 Sequence Name  T28F4.4a.3
Length (nt)  2948   Chromosome Location  I: 7486648-7494214
Chromosome . Primary Identifier  I Chromosome Location . Start  7486648
Chromosome Location . End  7494214 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F4.4a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012139 T28F4.4 T28F4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28F4.4a T28F4.4a 2154   I: 7486801-7486945

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T28F4.4a.3 7486648 7494214 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon19228   298   I: 7486648-7486945 Caenorhabditis elegans
Exon19234   134   I: 7487161-7487294 Caenorhabditis elegans
Exon19239   171   I: 7487342-7487512 Caenorhabditis elegans
Exon19244   172   I: 7487996-7488167 Caenorhabditis elegans
Exon19249   611   I: 7488211-7488821 Caenorhabditis elegans
Exon19254   112   I: 7489045-7489156 Caenorhabditis elegans
Exon19259   182   I: 7489214-7489395 Caenorhabditis elegans
Exon19264   394   I: 7489441-7489834 Caenorhabditis elegans
Exon19269   102   I: 7489885-7489986 Caenorhabditis elegans
Exon19275   137   I: 7490037-7490173 Caenorhabditis elegans
Exon19285   221   I: 7492944-7493164 Caenorhabditis elegans
Exon19289   122   I: 7493745-7493866 Caenorhabditis elegans
Exon19294   292   I: 7493923-7494214 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T28F4.4a.3 7486648 7494214 -1

1 Sequence

Length
2948

1 Sequence Ontology Term

Identifier Name Description
transcript