WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28F4.4a.1 Sequence Name  T28F4.4a.1
Length (nt)  3055   Chromosome Location  I: 7486648-7494736
Chromosome . Primary Identifier  I Chromosome Location . Start  7486648
Chromosome Location . End  7494736 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F4.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012139 T28F4.4 T28F4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28F4.4a T28F4.4a 2154   I: 7486801-7486945

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T28F4.4a.1 7486648 7494736 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon19229   298   I: 7486648-7486945 Caenorhabditis elegans
Exon19232   134   I: 7487161-7487294 Caenorhabditis elegans
Exon19237   171   I: 7487342-7487512 Caenorhabditis elegans
Exon19242   172   I: 7487996-7488167 Caenorhabditis elegans
Exon19247   611   I: 7488211-7488821 Caenorhabditis elegans
Exon19252   112   I: 7489045-7489156 Caenorhabditis elegans
Exon19257   182   I: 7489214-7489395 Caenorhabditis elegans
Exon19262   394   I: 7489441-7489834 Caenorhabditis elegans
Exon19267   102   I: 7489885-7489986 Caenorhabditis elegans
Exon19273   137   I: 7490037-7490173 Caenorhabditis elegans
Exon19283   221   I: 7492944-7493164 Caenorhabditis elegans
Exon19287   122   I: 7493745-7493866 Caenorhabditis elegans
Exon19291   290   I: 7493923-7494212 Caenorhabditis elegans
Exon19297   109   I: 7494628-7494736 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T28F4.4a.1 7486648 7494736 -1

1 Sequence

Length
3055

1 Sequence Ontology Term

Identifier Name Description
transcript