WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28F4.4a.4 Sequence Name  T28F4.4a.4
Length (nt)  2317   Chromosome Location  I: 7486648-7490177
Chromosome . Primary Identifier  I Chromosome Location . Start  7486648
Chromosome Location . End  7490177 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F4.4a.4

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012139 T28F4.4 T28F4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28F4.4a T28F4.4a 2154   I: 7486801-7486945

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T28F4.4a.4 7486648 7490177 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon19230   298   I: 7486648-7486945 Caenorhabditis elegans
Exon19235   134   I: 7487161-7487294 Caenorhabditis elegans
Exon19240   171   I: 7487342-7487512 Caenorhabditis elegans
Exon19245   172   I: 7487996-7488167 Caenorhabditis elegans
Exon19250   611   I: 7488211-7488821 Caenorhabditis elegans
Exon19255   112   I: 7489045-7489156 Caenorhabditis elegans
Exon19260   182   I: 7489214-7489395 Caenorhabditis elegans
Exon19265   394   I: 7489441-7489834 Caenorhabditis elegans
Exon19270   102   I: 7489885-7489986 Caenorhabditis elegans
Exon19277   141   I: 7490037-7490177 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T28F4.4a.4 7486648 7490177 -1

1 Sequence

Length
2317

1 Sequence Ontology Term

Identifier Name Description
transcript