WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F27D4.6a.1 Sequence Name  F27D4.6a.1
Length (nt)  3712   Chromosome Location  I: 7731121-7737995
Chromosome . Primary Identifier  I Chromosome Location . Start  7731121
Chromosome Location . End  7737995 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F27D4.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009190 F27D4.6 F27D4.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F27D4.6a F27D4.6a 3027   I: 7731190-7731227

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F27D4.6a.1 7731121 7737995 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

32 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon19966   107   I: 7731121-7731227 Caenorhabditis elegans
Exon19970   107   I: 7732073-7732179 Caenorhabditis elegans
Exon19974   159   I: 7732226-7732384 Caenorhabditis elegans
Exon19978   170   I: 7732431-7732600 Caenorhabditis elegans
Exon19982   187   I: 7732860-7733046 Caenorhabditis elegans
Exon19986   54   I: 7733121-7733174 Caenorhabditis elegans
Exon19990   197   I: 7733290-7733486 Caenorhabditis elegans
Exon19994   232   I: 7733705-7733936 Caenorhabditis elegans
Exon19998   83   I: 7733986-7734068 Caenorhabditis elegans
Exon20002   111   I: 7734121-7734231 Caenorhabditis elegans
Exon20006   332   I: 7734282-7734613 Caenorhabditis elegans
Exon20010   47   I: 7734660-7734706 Caenorhabditis elegans
Exon20014   80   I: 7734755-7734834 Caenorhabditis elegans
Exon20018   111   I: 7734880-7734990 Caenorhabditis elegans
Exon20022   139   I: 7735035-7735173 Caenorhabditis elegans
Exon20026   57   I: 7735221-7735277 Caenorhabditis elegans
Exon20030   80   I: 7735487-7735566 Caenorhabditis elegans
Exon20034   108   I: 7735611-7735718 Caenorhabditis elegans
Exon20038   73   I: 7735763-7735835 Caenorhabditis elegans
Exon20042   27   I: 7735884-7735910 Caenorhabditis elegans
Exon20046   60   I: 7735960-7736019 Caenorhabditis elegans
Exon20050   33   I: 7736255-7736287 Caenorhabditis elegans
Exon20054   233   I: 7736336-7736568 Caenorhabditis elegans
Exon20058   127   I: 7736616-7736742 Caenorhabditis elegans
Exon20062   146   I: 7736799-7736944 Caenorhabditis elegans
Exon20066   43   I: 7737001-7737043 Caenorhabditis elegans
Exon20069   90   I: 7737118-7737207 Caenorhabditis elegans
Exon20072   148   I: 7737255-7737402 Caenorhabditis elegans
Exon20076   110   I: 7737488-7737597 Caenorhabditis elegans
Exon20080   87   I: 7737645-7737731 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F27D4.6a.1 7731121 7737995 1

1 Sequence

Length
3712

1 Sequence Ontology Term

Identifier Name Description
transcript