WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:R11A5.4a Sequence Name  R11A5.4a
Length (nt)  1965   Chromosome Location  I: 7866401-7866436
Chromosome . Primary Identifier  I Chromosome Location . Start  7866401
Chromosome Location . End  7866436
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R11A5.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE12728 PCK-2, isoform a 73.4 654 Caenorhabditis elegans
 

Other

7 RNAi

WormBase ID
WBRNAi00001222
WBRNAi00051759
WBRNAi00051760
WBRNAi00004079
WBRNAi00034849
WBRNAi00116976
WBRNAi00090555

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:R11A5.4a 7866401 7866436 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011232 pck-2 R11A5.4 Caenorhabditis elegans

5 Locations


Feature . Primary Identifier
Start End Strand
CDS:R11A5.4a 7866401 7866436 1
CDS:R11A5.4a 7866484 7866588 1
CDS:R11A5.4a 7869967 7871132 1
CDS:R11A5.4a 7871178 7871484 1
CDS:R11A5.4a 7871533 7871883 1

1 Sequence

Length
1965

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R11A5.4a.1 R11A5.4a.1 2447   I: 7866136-7872100
Transcript:R11A5.4a.2 R11A5.4a.2 2275   I: 7866249-7872080