WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F20G4.1.1 Sequence Name  F20G4.1.1
Length (nt)  5049   Chromosome Location  I: 7918447-7926338
Chromosome . Primary Identifier  I Chromosome Location . Start  7918447
Chromosome Location . End  7926338 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F20G4.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008990 smgl-1 F20G4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F20G4.1 F20G4.1 4848   I: 7918647-7918874

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F20G4.1.1 7918447 7926338 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon20501   428   I: 7918447-7918874 Caenorhabditis elegans
Exon20502   656   I: 7920309-7920964 Caenorhabditis elegans
Exon20504   818   I: 7921245-7922062 Caenorhabditis elegans
Exon20506   366   I: 7922197-7922562 Caenorhabditis elegans
Exon20508   105   I: 7922606-7922710 Caenorhabditis elegans
Exon20510   899   I: 7922759-7923657 Caenorhabditis elegans
Exon20512   384   I: 7923910-7924293 Caenorhabditis elegans
Exon20514   408   I: 7924419-7924826 Caenorhabditis elegans
Exon20516   415   I: 7924874-7925288 Caenorhabditis elegans
Exon20518   375   I: 7925675-7926049 Caenorhabditis elegans
Exon20520   117   I: 7926094-7926210 Caenorhabditis elegans
Exon20522   78   I: 7926261-7926338 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F20G4.1.1 7918447 7926338 -1

1 Sequence

Length
5049

1 Sequence Ontology Term

Identifier Name Description
transcript