WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16C2.2a.1 Sequence Name  C16C2.2a.1
Length (nt)  2372   Chromosome Location  I: 9722721-9726284
Chromosome . Primary Identifier  I Chromosome Location . Start  9722721
Chromosome Location . End  9726284 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16C2.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001145 eat-16 C16C2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16C2.2a C16C2.2a 1422   I: 9722804-9722824

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16C2.2a.1 9722721 9726284 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon26212   104   I: 9722721-9722824 Caenorhabditis elegans
Exon26213   120   I: 9722875-9722994 Caenorhabditis elegans
Exon26215   84   I: 9723105-9723188 Caenorhabditis elegans
Exon26217   94   I: 9723253-9723346 Caenorhabditis elegans
Exon26219   79   I: 9723391-9723469 Caenorhabditis elegans
Exon26221   297   I: 9723847-9724143 Caenorhabditis elegans
Exon26223   114   I: 9724281-9724394 Caenorhabditis elegans
Exon26226   511   I: 9724442-9724952 Caenorhabditis elegans
Exon26228   86   I: 9724999-9725084 Caenorhabditis elegans
Exon26229   883   I: 9725402-9726284 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16C2.2a.1 9722721 9726284 1

1 Sequence

Length
2372

1 Sequence Ontology Term

Identifier Name Description
transcript