WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52F12.1b.1 Sequence Name  F52F12.1b.1
Length (nt)  1833   Chromosome Location  I: 9888357-9891544
Chromosome . Primary Identifier  I Chromosome Location . Start  9888357
Chromosome Location . End  9891544 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52F12.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003842 oct-1 F52F12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52F12.1b F52F12.1b 1707   I: 9888450-9888577

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52F12.1b.1 9888357 9891544 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon26651   221   I: 9888357-9888577 Caenorhabditis elegans
Exon26653   133   I: 9888743-9888875 Caenorhabditis elegans
Exon26655   397   I: 9888954-9889350 Caenorhabditis elegans
Exon26657   116   I: 9889402-9889517 Caenorhabditis elegans
Exon26659   187   I: 9889566-9889752 Caenorhabditis elegans
Exon26661   109   I: 9890061-9890169 Caenorhabditis elegans
Exon26663   259   I: 9890216-9890474 Caenorhabditis elegans
Exon26665   79   I: 9890880-9890958 Caenorhabditis elegans
Exon26667   83   I: 9891017-9891099 Caenorhabditis elegans
Exon26669   92   I: 9891198-9891289 Caenorhabditis elegans
Exon26671   79   I: 9891335-9891413 Caenorhabditis elegans
Exon26673   78   I: 9891467-9891544 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52F12.1b.1 9888357 9891544 -1

1 Sequence

Length
1833

1 Sequence Ontology Term

Identifier Name Description
transcript