WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y106G6H.5.1 Sequence Name  Y106G6H.5.1
Length (nt)  2799   Chromosome Location  I: 10438075-10443563
Chromosome . Primary Identifier  I Chromosome Location . Start  10438075
Chromosome Location . End  10443563 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y106G6H.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013718 pdpr-1 Y106G6H.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y106G6H.5 Y106G6H.5 2568   I: 10438288-10438464

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y106G6H.5.1 10438075 10443563 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon27884   390   I: 10438075-10438464 Caenorhabditis elegans
Exon27885   375   I: 10439138-10439512 Caenorhabditis elegans
Exon27886   444   I: 10439941-10440384 Caenorhabditis elegans
Exon27887   620   I: 10440830-10441449 Caenorhabditis elegans
Exon27888   153   I: 10441856-10442008 Caenorhabditis elegans
Exon27889   127   I: 10442056-10442182 Caenorhabditis elegans
Exon27890   125   I: 10442230-10442354 Caenorhabditis elegans
Exon27891   249   I: 10442403-10442651 Caenorhabditis elegans
Exon27892   137   I: 10442849-10442985 Caenorhabditis elegans
Exon27893   111   I: 10443031-10443141 Caenorhabditis elegans
Exon27894   68   I: 10443496-10443563 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y106G6H.5.1 10438075 10443563 -1

1 Sequence

Length
2799

1 Sequence Ontology Term

Identifier Name Description
transcript