WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y106G6H.5 Sequence Name  Y106G6H.5
Length (nt)  2568   Chromosome Location  I: 10438288-10438464
Chromosome . Primary Identifier  I Chromosome Location . Start  10438288
Chromosome Location . End  10438464
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y106G6H.5

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE32511 PDPR-1 94.9 855 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00055280
WBRNAi00004514
WBRNAi00036532
WBRNAi00117023

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y106G6H.5 10438288 10438464 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013718 pdpr-1 Y106G6H.5 Caenorhabditis elegans

11 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y106G6H.5 10438288 10438464 -1
CDS:Y106G6H.5 10439138 10439512 -1
CDS:Y106G6H.5 10439941 10440384 -1
CDS:Y106G6H.5 10440830 10441449 -1
CDS:Y106G6H.5 10441856 10442008 -1
CDS:Y106G6H.5 10442056 10442182 -1
CDS:Y106G6H.5 10442230 10442354 -1
CDS:Y106G6H.5 10442403 10442651 -1
CDS:Y106G6H.5 10442849 10442985 -1
CDS:Y106G6H.5 10443031 10443141 -1
CDS:Y106G6H.5 10443496 10443545 -1

1 Sequence

Length
2568

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y106G6H.5.1 Y106G6H.5.1 2799   I: 10438075-10443563