WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T22A3.5a.1 Sequence Name  T22A3.5a.1
Length (nt)  2566   Chromosome Location  I: 10598673-10606621
Chromosome . Primary Identifier  I Chromosome Location . Start  10598673
Chromosome Location . End  10606621 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T22A3.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011908 pash-1 T22A3.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T22A3.5a T22A3.5a 2256   I: 10598710-10598800

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T22A3.5a.1 10598673 10606621 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon28348   128   I: 10598673-10598800 Caenorhabditis elegans
Exon28350   273   I: 10598926-10599198 Caenorhabditis elegans
Exon28351   115   I: 10599243-10599357 Caenorhabditis elegans
Exon28352   100   I: 10599408-10599507 Caenorhabditis elegans
Exon28353   120   I: 10599556-10599675 Caenorhabditis elegans
Exon28354   69   I: 10600252-10600320 Caenorhabditis elegans
Exon28357   81   I: 10600601-10600681 Caenorhabditis elegans
Exon28361   237   I: 10603063-10603299 Caenorhabditis elegans
Exon28362   247   I: 10603355-10603601 Caenorhabditis elegans
Exon28364   530   I: 10604914-10605443 Caenorhabditis elegans
Exon28367   666   I: 10605956-10606621 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T22A3.5a.1 10598673 10606621 1

1 Sequence

Length
2566

1 Sequence Ontology Term

Identifier Name Description
transcript