WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T22A3.5a Sequence Name  T22A3.5a
Length (nt)  2256   Chromosome Location  I: 10598710-10598800
Chromosome . Primary Identifier  I Chromosome Location . Start  10598710
Chromosome Location . End  10598800
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T22A3.5a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE48538 PASH-1, isoform a 84.2 751 Caenorhabditis elegans
 

Other

11 RNAi

WormBase ID
WBRNAi00007597
WBRNAi00053774
WBRNAi00078382
WBRNAi00061325
WBRNAi00004255
WBRNAi00004257
WBRNAi00035780
WBRNAi00116982
WBRNAi00084845
WBRNAi00092810
WBRNAi00092811

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T22A3.5a 10598710 10598800 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011908 pash-1 T22A3.5 Caenorhabditis elegans

11 Locations


Feature . Primary Identifier
Start End Strand
CDS:T22A3.5a 10598710 10598800 1
CDS:T22A3.5a 10598926 10599198 1
CDS:T22A3.5a 10599243 10599357 1
CDS:T22A3.5a 10599408 10599507 1
CDS:T22A3.5a 10599556 10599675 1
CDS:T22A3.5a 10600252 10600320 1
CDS:T22A3.5a 10600601 10600681 1
CDS:T22A3.5a 10603063 10603299 1
CDS:T22A3.5a 10603355 10603601 1
CDS:T22A3.5a 10604914 10605443 1
CDS:T22A3.5a 10605956 10606348 1

1 Sequence

Length
2256

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T22A3.5a.1 T22A3.5a.1 2566   I: 10598673-10606621