WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y53C10A.4.1 Sequence Name  Y53C10A.4.1
Length (nt)  3014   Chromosome Location  I: 11979401-11985619
Chromosome . Primary Identifier  I Chromosome Location . Start  11979401
Chromosome Location . End  11985619 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y53C10A.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013135 rga-2 Y53C10A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y53C10A.4 Y53C10A.4 2727   I: 11979507-11979551

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y53C10A.4.1 11979401 11985619 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon31278   151   I: 11979401-11979551 Caenorhabditis elegans
Exon31279   128   I: 11980549-11980676 Caenorhabditis elegans
Exon31280   123   I: 11980744-11980866 Caenorhabditis elegans
Exon31281   115   I: 11980920-11981034 Caenorhabditis elegans
Exon31282   109   I: 11981076-11981184 Caenorhabditis elegans
Exon31283   202   I: 11981843-11982044 Caenorhabditis elegans
Exon31284   725   I: 11982305-11983029 Caenorhabditis elegans
Exon31285   352   I: 11983286-11983637 Caenorhabditis elegans
Exon31286   304   I: 11983897-11984200 Caenorhabditis elegans
Exon31288   349   I: 11984397-11984745 Caenorhabditis elegans
Exon31289   106   I: 11984967-11985072 Caenorhabditis elegans
Exon31290   350   I: 11985270-11985619 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y53C10A.4.1 11979401 11985619 1

1 Sequence

Length
3014

1 Sequence Ontology Term

Identifier Name Description
transcript