WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y18D10A.1.1 Sequence Name  Y18D10A.1.1
Length (nt)  5207   Chromosome Location  I: 12787943-12806581
Chromosome . Primary Identifier  I Chromosome Location . Start  12787943
Chromosome Location . End  12806581 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y18D10A.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012474 attf-6 Y18D10A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y18D10A.1 Y18D10A.1 4905   I: 12788210-12788371

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y18D10A.1.1 12787943 12806581 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon33030   429   I: 12787943-12788371 Caenorhabditis elegans
Exon33031   173   I: 12790042-12790214 Caenorhabditis elegans
Exon33032   286   I: 12791169-12791454 Caenorhabditis elegans
Exon33033   331   I: 12792659-12792989 Caenorhabditis elegans
Exon33034   299   I: 12794196-12794494 Caenorhabditis elegans
Exon33035   1527   I: 12795419-12796945 Caenorhabditis elegans
Exon33036   357   I: 12798038-12798394 Caenorhabditis elegans
Exon33037   90   I: 12800150-12800239 Caenorhabditis elegans
Exon33038   81   I: 12800298-12800378 Caenorhabditis elegans
Exon33039   99   I: 12800999-12801097 Caenorhabditis elegans
Exon33040   923   I: 12802495-12803417 Caenorhabditis elegans
Exon33041   259   I: 12804776-12805034 Caenorhabditis elegans
Exon33042   186   I: 12806014-12806199 Caenorhabditis elegans
Exon33043   111   I: 12806310-12806420 Caenorhabditis elegans
Exon33044   56   I: 12806526-12806581 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y18D10A.1.1 12787943 12806581 -1

1 Sequence

Length
5207

1 Sequence Ontology Term

Identifier Name Description
transcript