WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK256.1a.1 Sequence Name  ZK256.1a.1
Length (nt)  3263   Chromosome Location  I: 13004437-13023592
Chromosome . Primary Identifier  I Chromosome Location . Start  13004437
Chromosome Location . End  13023592 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK256.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004063 pmr-1 ZK256.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK256.1a ZK256.1a 2706   I: 13012220-13012531

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK256.1a.1 13004437 13023592 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon33355   65   I: 13004437-13004501 Caenorhabditis elegans
Exon33359   105   I: 13011591-13011695 Caenorhabditis elegans
Exon33362   399   I: 13012133-13012531 Caenorhabditis elegans
Exon33369   231   I: 13013377-13013607 Caenorhabditis elegans
Exon33374   276   I: 13013670-13013945 Caenorhabditis elegans
Exon33379   574   I: 13015161-13015734 Caenorhabditis elegans
Exon33384   303   I: 13019187-13019489 Caenorhabditis elegans
Exon33389   385   I: 13020257-13020641 Caenorhabditis elegans
Exon33395   265   I: 13021486-13021750 Caenorhabditis elegans
Exon33399   241   I: 13022388-13022628 Caenorhabditis elegans
Exon33404   419   I: 13023174-13023592 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK256.1a.1 13004437 13023592 1

1 Sequence

Length
3263

1 Sequence Ontology Term

Identifier Name Description
transcript