WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y6B3A.1a.1 Sequence Name  Y6B3A.1a.1
Length (nt)  5143   Chromosome Location  I: 13603906-13626225
Chromosome . Primary Identifier  I Chromosome Location . Start  13603906
Chromosome Location . End  13626225 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y6B3A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012386 agef-1 Y6B3A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y6B3A.1a Y6B3A.1a 4785   I: 13604237-13604396

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y6B3A.1a.1 13603906 13626225 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon34442   491   I: 13603906-13604396 Caenorhabditis elegans
Exon34443   150   I: 13604674-13604823 Caenorhabditis elegans
Exon34444   105   I: 13604884-13604988 Caenorhabditis elegans
Exon34445   279   I: 13605050-13605328 Caenorhabditis elegans
Exon34446   199   I: 13605573-13605771 Caenorhabditis elegans
Exon34447   136   I: 13605821-13605956 Caenorhabditis elegans
Exon34448   295   I: 13606396-13606690 Caenorhabditis elegans
Exon34449   332   I: 13607639-13607970 Caenorhabditis elegans
Exon34450   446   I: 13608910-13609355 Caenorhabditis elegans
Exon34451   464   I: 13616280-13616743 Caenorhabditis elegans
Exon34452   400   I: 13617795-13618194 Caenorhabditis elegans
Exon34453   354   I: 13619613-13619966 Caenorhabditis elegans
Exon34455   101   I: 13620602-13620702 Caenorhabditis elegans
Exon34456   157   I: 13620996-13621152 Caenorhabditis elegans
Exon34459   496   I: 13622103-13622598 Caenorhabditis elegans
Exon34461   114   I: 13623427-13623540 Caenorhabditis elegans
Exon34463   141   I: 13623596-13623736 Caenorhabditis elegans
Exon34465   317   I: 13624797-13625113 Caenorhabditis elegans
Exon34468   166   I: 13626060-13626225 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y6B3A.1a.1 13603906 13626225 -1

1 Sequence

Length
5143

1 Sequence Ontology Term

Identifier Name Description
transcript