WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105E8A.23a.1 Sequence Name  Y105E8A.23a.1
Length (nt)  3584   Chromosome Location  I: 14552030-14565853
Chromosome . Primary Identifier  I Chromosome Location . Start  14552030
Chromosome Location . End  14565853 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105E8A.23a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013680 rpom-1 Y105E8A.23 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105E8A.23a Y105E8A.23a 3417   I: 14552188-14552347

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105E8A.23a.1 14552030 14565853 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon35957   318   I: 14552030-14552347 Caenorhabditis elegans
Exon35960   120   I: 14552437-14552556 Caenorhabditis elegans
Exon35963   311   I: 14552860-14553170 Caenorhabditis elegans
Exon35967   205   I: 14555063-14555267 Caenorhabditis elegans
Exon35970   582   I: 14555936-14556517 Caenorhabditis elegans
Exon35973   595   I: 14558546-14559140 Caenorhabditis elegans
Exon35976   235   I: 14560037-14560271 Caenorhabditis elegans
Exon35979   188   I: 14561209-14561396 Caenorhabditis elegans
Exon35982   706   I: 14563406-14564111 Caenorhabditis elegans
Exon35985   263   I: 14565266-14565528 Caenorhabditis elegans
Exon35990   61   I: 14565793-14565853 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105E8A.23a.1 14552030 14565853 -1

1 Sequence

Length
3584

1 Sequence Ontology Term

Identifier Name Description
transcript