WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y105E8A.23a Sequence Name  Y105E8A.23a
Length (nt)  3417   Chromosome Location  I: 14552188-14552347
Chromosome . Primary Identifier  I Chromosome Location . Start  14552188
Chromosome Location . End  14552347
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105E8A.23a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE41276 RPOM-1, isoform a 131.3 1138 Caenorhabditis elegans
 

Other

10 RNAi

WormBase ID
WBRNAi00066079
WBRNAi00055227
WBRNAi00004486
WBRNAi00026557
WBRNAi00071084
WBRNAi00117018
WBRNAi00026555
WBRNAi00026556
WBRNAi00112009
WBRNAi00036494

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y105E8A.23a 14552188 14552347 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013680 rpom-1 Y105E8A.23 Caenorhabditis elegans

11 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y105E8A.23a 14552188 14552347 -1
CDS:Y105E8A.23a 14552437 14552556 -1
CDS:Y105E8A.23a 14552860 14553170 -1
CDS:Y105E8A.23a 14555063 14555267 -1
CDS:Y105E8A.23a 14555936 14556517 -1
CDS:Y105E8A.23a 14558546 14559140 -1
CDS:Y105E8A.23a 14560037 14560271 -1
CDS:Y105E8A.23a 14561209 14561396 -1
CDS:Y105E8A.23a 14563406 14564111 -1
CDS:Y105E8A.23a 14565266 14565528 -1
CDS:Y105E8A.23a 14565793 14565844 -1

1 Sequence

Length
3417

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y105E8A.23a.1 Y105E8A.23a.1 3584   I: 14552030-14565853
Transcript:Y105E8A.23a.2 Y105E8A.23a.2 3530   I: 14552075-14565844