WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E5A.7a.1 Sequence Name  Y54E5A.7a.1
Length (nt)  2250   Chromosome Location  I: 14711082-14715030
Chromosome . Primary Identifier  I Chromosome Location . Start  14711082
Chromosome Location . End  14715030 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E5A.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013202 gid-1 Y54E5A.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E5A.7a Y54E5A.7a 1869   I: 14711185-14711235

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E5A.7a.1 14711082 14715030 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon36387   154   I: 14711082-14711235 Caenorhabditis elegans
Exon36388   66   I: 14711292-14711357 Caenorhabditis elegans
Exon36389   91   I: 14711399-14711489 Caenorhabditis elegans
Exon36390   467   I: 14711799-14712265 Caenorhabditis elegans
Exon36392   187   I: 14712635-14712821 Caenorhabditis elegans
Exon36394   183   I: 14712906-14713088 Caenorhabditis elegans
Exon36396   154   I: 14713340-14713493 Caenorhabditis elegans
Exon36398   241   I: 14713549-14713789 Caenorhabditis elegans
Exon36401   166   I: 14714138-14714303 Caenorhabditis elegans
Exon36405   131   I: 14714427-14714557 Caenorhabditis elegans
Exon36414   410   I: 14714621-14715030 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E5A.7a.1 14711082 14715030 1

1 Sequence

Length
2250

1 Sequence Ontology Term

Identifier Name Description
transcript